Educational Resources for Students
This page collects various websites that students may find helpful as they learn topics associated with SIMCODES.
Table of Contents
🔗 Useful Python Resources
- Davit’s 3 day tutorial
- Covers scientific and numerical python
- Scientific Computing for Chemists
- Has lots of python examples in the context of chem/bio data analysis and modeling.
- Think Python
- Classic, short and well rounded book about python.
- Software carpentry
- Basics of Unix, git and python
🔗 Useful GitHub Resources
🔗 Useful Molecular Dynamics Resources
- Best Practices for Molecular Simulations
- openmm-tutorial-msbs
- OpenMM tutorials
- If you want to use OpenMM in Colab copy these cells.
- First Cell:
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!pip install -q condacolab import condacolab condacolab.install()
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- Second Cell.
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%%capture !conda install -c conda-forge openmm mdtraj
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